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* The weekly meetings of the IBIVU Bioinformatics group are on <font color=red>'''Thursdays'''</font> at <font color=red>'''11:00-12:15'''</font> in room <font color=red>'''[http://www.bio.vu.nl/vakgroepen/mcp/groep/M212Res1.php M2.12]'''</font>, ''unless indicated otherwise below''. Please find the meeting schedule below. 
* The [[collective literature scanning scheme]] will tell you who covers which journals. 
* Scheduled talks should be 25 minutes plus 20 minutes discussion.
* The last 20 minutes are reserved for presenting breakthrough results (on the board).

{| class="wikitable sortable"
|-
! Date:	!! Room/<br>Time:<br><small>(M212 at<br> 11:00)</small>	!! Speaker:	!! Subject:
|- style="font-weight:bold; background-color:#ffffcc;"
| [[2011-06-09]]	|| 	|| Bernd&nbsp;Brandt	||
|- style="font-weight:bold; background-color:#ffffcc;"
| 			|| 	|| + David Vossen || (Mid-internship talk) 
|- 
| [[2011-06-16]]	|| 	|| Jan&nbsp;Berkhout	||
|- 
| 			|| 	|| + Martijn Jansen || The BaseClear Genome Browser (Mid-internship talk) 
|- 
| [[2011-06-23]]	|| <font color=red>'''T4.69'''</font>
				|| All	|| Literature - in-depth AND [[collective literature scanning scheme|scanning]]
|- 
| [[2011-06-30]]	|| 	|| Punto&nbsp;Bawono || 
|-
| [[2011-07-07]]	|| 	|| Jaap&nbsp;Heringa || 
|- 
| [[2011-07-14]]	|| 	|| Mohammed&nbsp;El-Kebir || 
|- 
| '''summer break'''	|| 	||
|-
| [[2011-09-01]]	|| 	|| All	|| Literature - in-depth AND [[collective literature scanning scheme|scanning]]
|- 
| [[2011-09-08]]	|| 	|| Hannes&nbsp;Hettling || 
|- 
| [[2011-09-15]]	|| 	|| Douwe&nbsp;Molenaar || 
|- 
| [[2011-09-22]]	|| 	|| Anton&nbsp;Feenstra || 
|- 
| [[2011-09-29]]	|| 	|| All	|| Literature - in-depth AND [[collective literature scanning scheme|scanning]]
|- 
| [[2011-10-06]]	|| 	|| Anisha&nbsp;Goel ||
|- 
| [[2011-10-13]]	|| 	|| Sanne&nbsp;Abeln ||
|- 
| [[2011-10-20]]	|| <font color=red>'''????'''</font>
				|| Pinar&nbsp;Ozturk ||
|- 
| [[2011-10-27]]	|| 	|| All	|| Literature - in-depth AND [[collective literature scanning scheme|scanning]]
|- 
| [[2011-11-03]]	|| 	|| Nicola&nbsp;Bonzanni || 
|- 
|}


==Past topics:==
{| class="wikitable sortable"
|-
! Date:			!! 	!! Speaker:	!! Subject:
|- 
| [[2011-05-26]]	|| 	|| All	|| Literature - in-depth AND [[collective literature scanning scheme|scanning]]
* You are all invited to read [http://dx.crossref.org/10.1371%2Fjournal.pcbi.1002021 Hogeweg's paper].
|-
| 			|| 	|| + Michiel Vegt || (Mid-internship talk) 
|- 
| [[2011-05-12]]	|| 	|| René&nbsp;Pool 	|| The Development of a Molecular Simulation Based Engine for the Quantification of Protein-Protein Interactions
|- 
| [[2011-04-28]]	|| 	|| Nicola&nbsp;Bonzanni || Google WebToolkit
|- 
| [[2011-04-07]]	|| 	|| Pinar&nbsp;Ozturk
|- 
| [[2011-03-17]]	|| 	|| All	|| Literature - in-depth AND [[collective literature scanning scheme|scanning]]
* [http://bioinformatics.oxfordjournals.org/content/27/1/103.short Inverse perturbation for optimal intervention in gene regulatory networks]
* [http://www.biomedcentral.com/1471-2105/12/24 GraphCrunch 2: Software tool for network modeling, alignment and clustering]
* [http://rsif.royalsocietypublishing.org/content/early/2010/03/24/rsif.2010.0063.full Topological network alignment uncovers biological function and phylogeny] [http://www.doc.ic.ac.uk/~natasha/rsif.2010.0063.full.pdf PDF]
|- 
| [[2011-03-10]]	|| 	|| Anisha&nbsp;Goel
|- 
| [[2011-03-03]]	|| 	|| Anton&nbsp;Feenstra || SHMR: analyzing specificity in HIV disease progression and population evolution
|- 
| [[2011-02-24]]	|| 	|| All	|| Literature - in-depth AND [[collective literature scanning scheme|scanning]]
|- 
| [[2011-02-17]]	|| || Sanne || Protein solubility & aggregation with simple lattice models 
|- 
| [[2011-02-10]]	|| 	|| Douwe&nbsp;Molenaar || "Probiotics"
|- 
| [[2011-02-03]]	|| 	|| Hannes&nbsp;Hettling || Once Again on the Functions of Creatine Kinase: the Shuttle Hypothesis
|-
| [[2011-01-13]]	|| 	|| Mohammed El-Kebir || Network alignment
|- 
| [[2011-01-06]]	|| 	|| Jaap Heringa	|| New Year's speech
|- 
| [[2010-12-02]]	||	|| Arjan van der Velde || Distance-based alignment scoring
|-
| [[2010-11-25]]	||	|| René Pool || Course-grained calculations of Protein-interaction PMF by grand-canonical MC
|- 
| [[2010-11-18]]	||	|| All	|| Literature - in-depth discussion AND scanning:<br> [[media:Shaw_Science_330_15Oct2010_341.pdf|Shaw Science 330 15 Oct 2010 341]] <br>[[media:ScienceNewsOfTheWeek_330_15Oct2010_308.pdf|Science News Of The Week 330 15 Oct 2010 308]] 
|- 
| [[2010-11-11]]	||	|| Nicola Bonzanni || The role of proteosome-mediated proteolysis in modulating the activity of potentially harmful transcription factor activity in ''Saccharomyces cerevisiae''
|- 
|}
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