Meeting schedule
From Ibivu
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* The [[literature scanning scheme]] will tell you who covers which journals. | * The [[literature scanning scheme]] will tell you who covers which journals. | ||
* Scheduled talks should be 25 minutes plus 20 minutes discussion. | * Scheduled talks should be 25 minutes plus 20 minutes discussion. | ||
| + | * Talks should '''not be about finished work''' (that goes into the big IBIVU meeting) | ||
| + | ** highlight methodology and open problems | ||
* The last 20 minutes are reserved for presenting breakthrough results (on the board). | * The last 20 minutes are reserved for presenting breakthrough results (on the board). | ||
* If you want to schedule a presentation please contact Punto Bawono (p.bawono@vu.nl) | * If you want to schedule a presentation please contact Punto Bawono (p.bawono@vu.nl) | ||
Revision as of 09:45, 24 May 2012
- The weekly meetings of the IBIVU Bioinformatics group are on Thursdays at 11:00-12:15 in room M2.12, unless indicated otherwise below. Please find the meeting schedule below.
- The literature scanning scheme will tell you who covers which journals.
- Scheduled talks should be 25 minutes plus 20 minutes discussion.
- Talks should not be about finished work (that goes into the big IBIVU meeting)
- highlight methodology and open problems
- The last 20 minutes are reserved for presenting breakthrough results (on the board).
- If you want to schedule a presentation please contact Punto Bawono (p.bawono@vu.nl)
- The first meeting of every month will be the IBIVU seminar, with selected talks of members of the IBIVU (Teusink and Heringa groups, or invited speakers)
- we will organize a separate monthly session for internship presentations
| Date: | Room/ Time: (M212 at 11:00) | Speaker: | Subject: |
|---|---|---|---|
| 2012-05-24 | M2.12 | All | Literature |
| 2012-05-31 | P4.23 | Qingzhen Hou | Plan "Sequence Analysis of Homodimer and Monomer Ortholog groups" |
| 2012-06-07 | F6.54 | <t.b.a.> | Bioinformatics & Systems Biology seminar |
| 2012-06-14 | M2.12 | Mohammed El-Kebir | |
| 2012-06-21 | M2.12 | All | Literature |
| 2012-06-28 | M2.12 | Punto Bawono | |
| 2012-07-05 | M2.12 | Hannes Hettling | |
| 2012-07-12 | M2.12 | All | Literature |
| <summer holiday> | |||
| 2012-08-23 | M2.12 | Anton Feenstra | |
| 2012-08-30 | M2.12 | Ali May | |
| 2012-09-06 | <t.b.a.> | <t.b.a.> | Bioinformatics & Systems Biology seminar |
| 2012-09-13 | M2.12 | Erik van Dijk |
Past topics:
| Date: | Speaker: | Subject: | ||
|---|---|---|---|---|
| 2012-05-17 | <ascension day> | |||
| 2012-05-10 | M2.12 |
| ||
| 2012-04-26 | M2.12 | Nicola Bonzanni | Object Oriented Gene Regulatory Networks | |
| 2012-04-19 | M2.12 | Ali May | proposal defense | |
| Anton Feenstra | Talavera et al. JMB 2012 - Evolvability of Yeast Protein-Protein Interaction Interfaces | |||
| All | Literature | |||
| 2012-04-12 | Sanne Abeln | "The effect of denoising and clustering on 16S pyrosequencing datasets" | ||
| 2012-04-05 | Huub Hoefsloot | Bioinformatics & Systems Biology seminar: Integrating multivariate statistics with knowledge | ||
| 2012-03-29 | All + Ali May | in-depth literature discussion Media:nmeth.1376.pdf | ||
| 2012-03-15 | Anton Feenstra | Calculating (effective) force profiles using umbrella sampling. | ||
| 2012-03-08 | Evert Bosdriesz | Bioinformatics & Systems Biology seminar "Optimal and robust regulation of gene expression". | ||
| 2012-03-01 | Hannes Hettling |
Continued discussion of Retrieval, alignment, and clustering of computational models based on semantic annotations by Schulz, Krause, Le Novere, Klipp, and Liebermeister (Molecular Systems Biology 2011 7:512) | ||
| 2012-02-23 | Leonardos Mageiros | mid/end internship talk "Environment-Specific Protein Structural Alignment" | ||
| All | Literature | |||
| 2012-02-09 |
| |||
| 2012-02-02 | Joost Boele | IBIVU seminar "PAPD5 mediates isomiR-specific adenylation of oncomiR miR-21 to induce its degradation in a novel tumor suppression pathway" | ||
| 2012-01-26 |
| |||
| 2012-01-12 | Hayssam Soueidan | IBIVU seminar Network reconstruction from text mining | ||
| 2012-01-05 | Jaap Heringa | New Year's speach | ||
| 2011-12-15 | Nicola Bonzanni | |||
| 2011-12-08 |
| |||
| 2011-12-01 |
IBIVU seminar:
| |||
| 2011-11-24 | Anton Feenstra | Sequence Specificity, Conservation and Protein-Protein Interactions | ||
| 2011-11-03 | Herwig Bachmann | IBIVU seminar "Privatization of public goods leads to increased microbial efficiency but decreases growth rates" | ||
| 2011-10-27 | Hannes Hettling | |||
| 2011-10-20 | All | Literature MSAProbs - Liu Schmidt Maskell 2011 | ||
| 2011-10-20 | Bianca Mladek | IBIVU Seminar "Coarse graining DNA-coated colloids" abstract | ||
| 2011-10-13 | Mohammed El-Kebir | |||
| 2011-10-06 | Brett Olivier | IBIVU seminar "Stochastic Modeling" | ||
| 2011-09-22 | Anton Feenstra | Zenith Proposal: Petri-net modeling of b-Catenin signaling | ||
| 2011-09-15 | Punto Bawono | |||
| 2011-09-08 | Nicola Bonzanni | IBIVU seminar "Why stochastic modeling?" | ||
| 2011-09-01 | Hannes Hettling | |||
| 2011-06-23 | All | Literature: Non-adaptive origins of interactome complexity | ||
| 2011-06-09 | Bernd Brandt | The Fanconi / ENFANC project | ||
| + David Vossen | (Mid-internship talk) | |||
| 2011-05-26 | All | Hogeweg's paper. | ||
| + Michiel Vegt | (Mid-internship talk) | |||
| 2011-05-12 | René Pool | The Development of a Molecular Simulation Based Engine for the Quantification of Protein-Protein Interactions | ||
| 2011-04-28 | Nicola Bonzanni | Google WebToolkit | ||
| 2011-04-07 | Pinar Ozturk | |||
| 2011-03-17 | All | |||
| 2011-03-10 | Anisha Goel | |||
| 2011-03-03 | Anton Feenstra | SHMR: analyzing specificity in HIV disease progression and population evolution | ||
| 2011-02-24 | All | Literature - in-depth AND scanning | ||
| 2011-02-17 | Sanne | Protein solubility & aggregation with simple lattice models | ||
| 2011-02-10 | Douwe Molenaar | "Probiotics" | ||
| 2011-02-03 | Hannes Hettling | Once Again on the Functions of Creatine Kinase: the Shuttle Hypothesis | ||
| 2011-01-13 | Mohammed El-Kebir | Network alignment | ||
| 2011-01-06 | Jaap Heringa | New Year's speech | ||
| 2010-12-02 | Arjan van der Velde | Distance-based alignment scoring | ||
| 2010-11-25 | René Pool | Course-grained calculations of Protein-interaction PMF by grand-canonical MC | ||
| 2010-11-18 | All | Shaw Science 330 15 Oct 2010 341 Science News Of The Week 330 15 Oct 2010 308 | ||
| 2010-11-11 | Nicola Bonzanni | The role of proteosome-mediated proteolysis in modulating the activity of potentially harmful transcription factor activity in Saccharomyces cerevisiae | ||
