Meeting schedule

From Ibivu

• The weekly meetings of the IBIVU Bioinformatics group are on Thursdays at 11:00-12:15 in room M2.12, unless indicated otherwise below. Please find the meeting schedule below.
• The literature scanning scheme will tell you who covers which journals.
• Scheduled talks should be 25 minutes plus 20 minutes discussion.
• The last 20 minutes are reserved for presenting breakthrough results (on the board).
• If you want to schedule a presentation please contact Punto Bawono (p.bawono@vu.nl)

• The first meeting of every month will be the IBIVU seminar, with selected talks of members of the IBIVU (Teusink and Heringa groups, or invited speakers)

Date:	Room/ Time: (M212 at 11:00)	Speaker:	Subject:	2012-02-02	M2.12	<t.b.a.>	IBIVU seminar
2012-02-09	M2.12	Marlies van der Wees: mid-internship talk Punto Bawono: "Motif-aware MSA + praline"
2012-02-16	M2.12	Margriet Wassenaar: internship talk Mohammed El-Kebir
2012-02-23	M2.12	All	Literature
2012-03-01	M2.12	<t.b.a.>	IBIVU seminar
2012-03-08	M2.12	Hannes Hettling
2012-03-15	M2.12	Anton Feenstra
2012-03-22	M2.12	Sanne Abeln
2012-03-29	M2.12	All	Literature
2012-04-05	F6.54	<t.b.a.>	IBIVU seminar
2012-04-12	M2.12	Nicola Bonzanni
2012-04-19	M2.12	Jaap Heringa
2012-04-26	M2.12	All	Literature

Past topics:

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2012-01-19	No Group meeting
2012-01-26	M2.12	Danielle de Man: mid-internship talk "Evolving a gene Regulatory Network" All + Hannes: in-depth literature discussion Media:MSB201141.pdf
Date:		Speaker:	Subject:
2012-01-12		Hayssam Soueidan	IBIVU seminar Network reconstruction from text mining
2012-01-05		Jaap Heringa	New Year's speach
2011-12-15		Nicola Bonzanni
2011-12-08		Ali May: mid-internship talk All: Literature - in-depth AND scanning
2011-12-01		IBIVU seminar: Erik van Dijk "Introducing the Hydrophobic effect in Lattice Models of Protein Folding" Sanne Abeln: "Self assembly into silk fibrils"
2011-11-24		Anton Feenstra	Sequence Specificity, Conservation and Protein-Protein Interactions
2011-11-03		Herwig Bachmann	IBIVU seminar "Privatization of public goods leads to increased microbial efficiency but decreases growth rates"
2011-10-27		Hannes Hettling
2011-10-20		All	Literature MSAProbs - Liu Schmidt Maskell 2011
2011-10-20		Bianca Mladek	IBIVU Seminar "Coarse graining DNA-coated colloids" abstract
2011-10-13		Mohammed El-Kebir
2011-10-06		Brett Olivier	IBIVU seminar "Stochastic Modeling"
2011-09-22		Anton Feenstra	Zenith Proposal: Petri-net modeling of b-Catenin signaling
2011-09-15		Punto Bawono
2011-09-08		Nicola Bonzanni	IBIVU seminar "Why stochastic modeling?"
2011-09-01		Hannes Hettling
2011-06-23		All	Literature: Non-adaptive origins of interactome complexity
2011-06-09		Bernd Brandt	The Fanconi / ENFANC project
		+ David Vossen	(Mid-internship talk)
2011-05-26		All	Hogeweg's paper.
		+ Michiel Vegt	(Mid-internship talk)
2011-05-12		René Pool	The Development of a Molecular Simulation Based Engine for the Quantification of Protein-Protein Interactions
2011-04-28		Nicola Bonzanni	Google WebToolkit
2011-04-07		Pinar Ozturk
2011-03-17		All	Inverse perturbation for optimal intervention in gene regulatory networks GraphCrunch 2: Software tool for network modeling, alignment and clustering Topological network alignment uncovers biological function and phylogeny PDF
2011-03-10		Anisha Goel
2011-03-03		Anton Feenstra	SHMR: analyzing specificity in HIV disease progression and population evolution
2011-02-24		All	Literature - in-depth AND scanning
2011-02-17		Sanne	Protein solubility & aggregation with simple lattice models
2011-02-10		Douwe Molenaar	"Probiotics"
2011-02-03		Hannes Hettling	Once Again on the Functions of Creatine Kinase: the Shuttle Hypothesis
2011-01-13		Mohammed El-Kebir	Network alignment
2011-01-06		Jaap Heringa	New Year's speech
2010-12-02		Arjan van der Velde	Distance-based alignment scoring
2010-11-25		René Pool	Course-grained calculations of Protein-interaction PMF by grand-canonical MC
2010-11-18		All	Shaw Science 330 15 Oct 2010 341 Science News Of The Week 330 15 Oct 2010 308
2010-11-11		Nicola Bonzanni	The role of proteosome-mediated proteolysis in modulating the activity of potentially harmful transcription factor activity in Saccharomyces cerevisiae