Warning: Cannot modify header information - headers already sent by (output started at /data/extensions-1.12.2/secure-include.php:794) in /var/www/html/includes/WebResponse.php on line 10

Warning: Cannot modify header information - headers already sent by (output started at /data/extensions-1.12.2/secure-include.php:794) in /var/www/html/includes/WebResponse.php on line 10
Meeting schedule - Ibivu

Meeting schedule

From Ibivu

(Difference between revisions)
Jump to: navigation, search
(Past topics:)
Line 51: Line 51:
! Subject:
! Subject:
|-
|-
-
| [[2012-03-08]] || C6.59 || Evert Bosdriesz || Bioinformatics & Systems Biology seminar <br>"''[[2012-03-08 IBIVU Evert Bosdriesz|Optimal and robust regulation of gene expression]]''".
+
| [[2012-03-08]] || || Evert Bosdriesz || Bioinformatics & Systems Biology seminar <br>"''[[2012-03-08 IBIVU Evert Bosdriesz|Optimal and robust regulation of gene expression]]''".
|-
|-
-
| [[2012-03-01]] || C6.24 || Hannes Hettling ||
+
| [[2012-03-01]] || || Hannes Hettling ||
Continued discussion of ''Retrieval, alignment, and clustering of computational
Continued discussion of ''Retrieval, alignment, and clustering of computational
models based on semantic annotations'' by Schulz, Krause, Le Novere,
models based on semantic annotations'' by Schulz, Krause, Le Novere,
Line 59: Line 59:
|-
|-
| rowspan=2 | [[2012-02-23]]
| rowspan=2 | [[2012-02-23]]
-
| rowspan=2 | M2.12
+
| rowspan=2 |
|| Leonardos Mageiros || mid/end internship talk "'''Environment-Specific Protein Structural Alignment'''"
|| Leonardos Mageiros || mid/end internship talk "'''Environment-Specific Protein Structural Alignment'''"
|-
|-

Revision as of 15:24, 12 March 2012

  • The weekly meetings of the IBIVU Bioinformatics group are on Thursdays at 11:00-12:15 in room M2.12, unless indicated otherwise below. Please find the meeting schedule below.
  • The literature scanning scheme will tell you who covers which journals.
  • Scheduled talks should be 25 minutes plus 20 minutes discussion.
  • The last 20 minutes are reserved for presenting breakthrough results (on the board).
  • If you want to schedule a presentation please contact Punto Bawono (p.bawono@vu.nl)
  • The first meeting of every month will be the IBIVU seminar, with selected talks of members of the IBIVU (Teusink and Heringa groups, or invited speakers)
Date: Room/
Time:
(M212 at 11:00)
Speaker: Subject:
2012-03-15 M2.12 Anton Feenstra
2012-03-22 M2.12 Sanne Abeln
2012-03-29 M2.12 All Literature
2012-04-05 F6.54 Huub Hoefsloot Bioinformatics & Systems Biology seminar
2012-04-12 M2.12 Nicola Bonzanni
2012-04-19 M2.12 Jaap Heringa
2012-04-26 M2.12 All Literature
2012-05-03 F6.54 <t.b.a.> Bioinformatics & Systems Biology seminar
2012-05-10 M2.12 Qingzhen Hou
2012-05-17 M2.12 Mohammed El-Kebir
2012-05-24 M2.12 All Literature
2012-05-31 M2.12 Punto Bawono
2012-06-07 M2.12 Hannes Hettling


Past topics:

Date: Speaker: Subject:
2012-03-08 Evert Bosdriesz Bioinformatics & Systems Biology seminar
"Optimal and robust regulation of gene expression".
2012-03-01 Hannes Hettling

Continued discussion of Retrieval, alignment, and clustering of computational models based on semantic annotations by Schulz, Krause, Le Novere, Klipp, and Liebermeister (Molecular Systems Biology 2011 7:512)

2012-02-23 Leonardos Mageiros mid/end internship talk "Environment-Specific Protein Structural Alignment"
All Literature
2012-02-09
  • Marlies van der Wees: mid-internship talk
  • Punto Bawono: "Motif-aware MSA + praline"
2012-02-02 Joost Boele IBIVU seminar "PAPD5 mediates isomiR-specific adenylation of oncomiR miR-21 to induce its degradation in a novel tumor suppression pathway"
2012-01-26
  • Danielle de Man: mid-internship talk "Evolving a gene Regulatory Network"
  • All + Hannes: in-depth literature discussion Media:MSB201141.pdf
2012-01-12 Hayssam Soueidan IBIVU seminar Network reconstruction from text mining
2012-01-05 Jaap Heringa New Year's speach
2011-12-15 Nicola Bonzanni
2011-12-08
  • Ali May: mid-internship talk
  • All: Literature - in-depth AND scanning
2011-12-01

IBIVU seminar:

  • Erik van Dijk "Introducing the Hydrophobic effect in Lattice Models of Protein Folding"
  • Sanne Abeln: "Self assembly into silk fibrils"
2011-11-24 Anton Feenstra Sequence Specificity, Conservation and Protein-Protein Interactions
2011-11-03 Herwig Bachmann IBIVU seminar "Privatization of public goods leads to increased microbial efficiency but decreases growth rates"
2011-10-27 Hannes Hettling
2011-10-20 All Literature MSAProbs - Liu Schmidt Maskell 2011
2011-10-20 Bianca Mladek IBIVU Seminar "Coarse graining DNA-coated colloids" abstract
2011-10-13 Mohammed El-Kebir
2011-10-06 Brett Olivier IBIVU seminar "Stochastic Modeling"
2011-09-22 Anton Feenstra Zenith Proposal: Petri-net modeling of b-Catenin signaling
2011-09-15 Punto Bawono
2011-09-08 Nicola Bonzanni IBIVU seminar "Why stochastic modeling?"
2011-09-01 Hannes Hettling
2011-06-23 All Literature: Non-adaptive origins of interactome complexity
2011-06-09 Bernd Brandt The Fanconi / ENFANC project
+ David Vossen (Mid-internship talk)
2011-05-26 All Hogeweg's paper.
+ Michiel Vegt (Mid-internship talk)
2011-05-12 René Pool The Development of a Molecular Simulation Based Engine for the Quantification of Protein-Protein Interactions
2011-04-28 Nicola Bonzanni Google WebToolkit
2011-04-07 Pinar Ozturk
2011-03-17 All
2011-03-10 Anisha Goel
2011-03-03 Anton Feenstra SHMR: analyzing specificity in HIV disease progression and population evolution
2011-02-24 All Literature - in-depth AND scanning
2011-02-17 Sanne Protein solubility & aggregation with simple lattice models
2011-02-10 Douwe Molenaar "Probiotics"
2011-02-03 Hannes Hettling Once Again on the Functions of Creatine Kinase: the Shuttle Hypothesis
2011-01-13 Mohammed El-Kebir Network alignment
2011-01-06 Jaap Heringa New Year's speech
2010-12-02 Arjan van der Velde Distance-based alignment scoring
2010-11-25 René Pool Course-grained calculations of Protein-interaction PMF by grand-canonical MC
2010-11-18 All Shaw Science 330 15 Oct 2010 341
Science News Of The Week 330 15 Oct 2010 308
2010-11-11 Nicola Bonzanni The role of proteosome-mediated proteolysis in modulating the activity of potentially harmful transcription factor activity in Saccharomyces cerevisiae
Personal tools

Warning: Cannot modify header information - headers already sent by (output started at /data/extensions-1.12.2/secure-include.php:794) in /var/www/html/includes/WebResponse.php on line 10

Warning: Cannot modify header information - headers already sent by (output started at /data/extensions-1.12.2/secure-include.php:794) in /var/www/html/includes/WebResponse.php on line 10

Warning: Cannot modify header information - headers already sent by (output started at /data/extensions-1.12.2/secure-include.php:794) in /var/www/html/includes/WebResponse.php on line 10

Warning: Cannot modify header information - headers already sent by (output started at /data/extensions-1.12.2/secure-include.php:794) in /var/www/html/includes/WebResponse.php on line 10