Algorithms in Sequence Analysis
From Master Projects
Lectures
| Lecture Topic | Slides | Reading before the lecture! | ||
|---|---|---|---|---|
| Lecture 1 | General introduction and pairwise alignment 1 / housekeeping | asa_2012_lec1.pdf | hunter.pdf Chapter 1 | |
| Lecture 2 | Pairwise alignment 2 | asa_2012_lec2.pdf | ||
| Lecture 3 | Residue substitution models | asa_2012_lec3.pdf | ||
| Lecture 4 | Multiple sequence alignment 1 | asa_2012_lec4.pdf | ||
| Lecture 5 | Multiple sequence alignment 2 | asa_2012_lec5.pdf | ||
| Lecture 6 | Homology searching 1 | asa_2012_lec6.pdf | ||
| Lecture 7 | Sequence entropy and harmony | asa_2012_lec7.pdf | ||
| Lecture 8 | Homology searching 2 | asa_2012_lec8.pdf | ||
| Lecture 9 | Markov chain models | asa_2012_lec9.pdf | ||
| Lecture 10 | Hidden Markov models | asa_2012_lec10.pdf | hmm_paper_rabiner.pdf Rabiner | krogh-hmm-chapter4.pdf Krogh Chapter 4 |
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