Algorithms in Sequence Analysis 2011-2012

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Schedule

ASA_2011_schedule.pdf


Assignments

Lectures

Lecture Topic Slides Handouts Reading
Lecture 1 - Pairwise Alignment I ASA_2011_lec1.pdf ASA_2011_lec1_handout.pdf
Lecture 2 - Pairwise Alignment II ASA_2011_lec2.pdf ASA_2011_lec2_handout.pdf
Lecture 3 - Substitution matrices ASA_2011_lec3.pdf ASA_2011_lec3_handout.pdf
Lecture 4 - Multiple Sequence Alignment I ASA_2011_lec4.pdf ASA_2011_lec4_handout.pdf
Lecture 5 - Multiple Sequence Alignment II ASA_2011_lec5.pdf ASA_2011_lec5_handout.pdf
Lecture 6 - Markov models ASA_2011_lec6.pdf ASA_2011_lec6_handout.pdf
Lecture 7 - Hidden Markov Models ASA_2011_lec7.pdf ASA_2011_lec7_handout.pdf Rabiner.pdf Krogh.pdf
Lecture 8 - Homology searching I ASA_2011_lec8.pdf ASA_2011_lec8_handout.pdf
Lecture 9 - Homology searching II ASA_2011_lec9.pdf ASA_2011_lec9_handout.pdf
Lecture 10 - Evolution/Phylogeny I ASA_2011_lec10.pdf ASA_2011_lec10_handout.pdf
Lecture 11 - Phylogeny II / Sequence motifs I ASA_2011_lec11.pdf ASA_2011_lec11_handout.pdf
Lecture 12 - Sequence Entropy ASA_2011_lec12.pdf ASA_2011_lec12_handout.pdf
Lecture 13 - Sequence motifs II ASA_2011_lec13.pdf ASA_2011_lec13_handout.pdf
Lecture 14 - Genome Analysis / Comparative Genomics ASA_2011_lec14.pdf ASA_2011_lec14_handout.pdf



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