Bioinformatics Programming Classes 2011-2012

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Reading

  • Recommended book: Learning Python, Mark Lutz, David Ascher, O'Reilly Media


Course Material

Class 1 - intro to linux


Class 2 - python shell: print, operator, types, if exercise: 'calculation' script


Class 3 - lists, for exercise: sum i over n; n!


Class 4 - Functions, scope, namespace, import, while exercise: calculator using functions; interactive calculator with error handling; guessing game


Class 5 - file I/O, dictionaries, string manipulation (e.g., split) exercise: codon table & translation


Class 6 - Regular expressions, Multi-dimensional arrays (lists, dictionaries), urls exercise: GO parsing


Class 8 - Advanced issues: classes, documentation


Back to: Fundamentals of Bioinformatics




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