Bioinformatics Programming Classes 2012-2013

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Reading

  • Recommended book: Learning Python, Mark Lutz, David Ascher, O'Reilly Media


... after this class ...

If you are thinking of choosing the Bioinformatics profile (even if you're not sure yet) you should already (now) enroll in the course Inleiding programmeren (Python) course ID 401096 via VUnet. Currently, this seems not to be possible because the course is not linked to the master programme. I will try to get this sorted out as soon as possible.


Course Material

Class 1 - intro to linux


Class 2 - python shell: print, operator, types, if exercise: 'calculation' script


Class 3 - lists, for exercise: sum i over n; n!


Class 4 - Functions, scope, namespace, import, while exercise: calculator using functions; interactive calculator with error handling; guessing game


Class 5 - file I/O, dictionaries, string manipulation (e.g., split) exercise: codon table & translation


Class 6 - Regular expressions


Class 7 - Putting everything together exercise: GO parsing



Back to: Fundamentals of Bioinformatics | Introduction to Systems Biology



Back to: Bioinf & Sys Bio Master | Bioinf & Sys Bio Internships | Bioinf & Sys Bio Projects