Introduction to Systems Biology 2011-2012

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Important dates:

  • first mathematics test will be 5th of Oct at 11 am
  • Biology test will be Friday 21st of October at 10 am,

NIKHEF room F3.21 (lecture room)

General information: note: update of the general info, with info on the Friday biology class

Sept 7th:

Sept 8th:

Sept 14th: lecture by Frank Bruggeman WN-P663 Assignment in WN-P323!!!

After downloading the doc file, please change the extension into .nb (mathematica notebook). Wiki does not accept this extension... Pictures from Frank:

Mathematica installation instructions: VU students with an FEW accounts (all of you have such an account): 1. Download and installation instructions can be found at: 2. For the different distributions of Mathematica (Linux, Apple, Windows) go to:

UVA students should contact Huub Hoefsloot <> to install an UVA license.

Sept 15th: Lectures in Artis: please be there at 9.30 SHARP Assignments are between 14 and 17 at the VU, WN-F229. Your presence is obligatory.

Sept 21st: Lecture from Huub Hoefsloot in WN-P663, computer practical is in WN-P323 (this is different than VUrooster!!!) because of the need for Matlab

extra files:

Sept 22nd: Lectures in Artis, same recipe. In the afternoon there will be instructions first in M212

Sept 28th: Lectures from Joost Teixeira de Mattos

Sept 29th: Lecture from Bas Teusink

Lecture from Hans Westerhoff

Oct 5th:

  • 9.00-11.00 lecture by Bas Teusink (blackboard teaching).
  • 11.00-12.00 mathematics test.
  • 12.00-13.00 lunch.
  • 13.00-16.00 mathematics: linear algebra.

Oct 6th: Lecture by Douwe Molenaar

Assignment for 6th of October:

Oct 12th: Lecture by Frank Bruggeman

Oct 13th: Lecture by, again, Frank Bruggeman

Topics for literature assignment: still a bit messy, but should give an idea:

Here are the groups for the literature study. Read the instructions carefully! Also note a few changes compared to the mailed version.