User contributions
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- 14:42, 9 November 2015 (diff | hist) . . (+2,410) . . N Mining gene regulation pathways in transcriptome datasets (New page: {{Projectproposal |Contact person=Douwe Molenaar |Contact person2=Leendert Hamoen |Master areas=Systems Biology |Fulfilled=No }} ''Bacillus subtilis'' is one of the best know bacterial mo...)
- 14:27, 9 November 2015 (diff | hist) . . (+1) . . Efficient storage and analysis of high-dimensional metabolic data (current)
- 09:20, 9 November 2015 (diff | hist) . . (+1) . . Bioinformatic analysis of whole genome sequencing data from clinical Mycobacterium tuberculosis and Leptospira sp. strains (current)
- 11:57, 24 February 2015 (diff | hist) . . (0) . . Bioinformatic analysis of whole genome sequencing data from clinical Mycobacterium tuberculosis and Leptospira sp. strains
- 11:56, 24 February 2015 (diff | hist) . . (+3) . . Bioinformatic analysis of whole genome sequencing data from clinical Mycobacterium tuberculosis and Leptospira sp. strains
- 11:56, 24 February 2015 (diff | hist) . . (+14) . . Bioinformatic analysis of whole genome sequencing data from clinical Mycobacterium tuberculosis and Leptospira sp. strains
- 11:54, 24 February 2015 (diff | hist) . . (+2,925) . . N Bioinformatic analysis of whole genome sequencing data from clinical Mycobacterium tuberculosis and Leptospira sp. strains (New page: {{Projectproposal |Contact person=Douwe Molenaar |Contact person2=Indra Bergval |Master areas=Systems Biology, Bioinformatics |Fulfilled=No }} Tuberculosis (TB) is one of the most severe i...)
- 15:34, 26 January 2015 (diff | hist) . . (+1,699) . . N Linking variations in gene composition of the microbiome to health conditions (New page: {{Projectproposal |Contact person=Douwe Molenaar |Contact person2=Remco Kort |Master areas=Systems Biology, Bioinformatics |Fulfilled=No }} This internship concerns the identification of b...)
- 08:25, 7 January 2015 (diff | hist) . . (0) . . Efficient storage and analysis of high-dimensional metabolic data
- 08:23, 7 January 2015 (diff | hist) . . (+1) . . Easy processing of high-throughput microplate data (current)
- 08:23, 7 January 2015 (diff | hist) . . (0) . . N File:Report.pdf (current)
- 08:21, 7 January 2015 (diff | hist) . . (+72) . . Developing analysis pipeline for protein-protein interaction data
- 16:20, 6 January 2015 (diff | hist) . . (+1,420) . . N Developing analysis pipeline for protein-protein interaction data (New page: {{Projectproposal |Contact person=Douwe Molenaar |Contact person2=Rob Haselberg |Master areas=Systems Biology |Fulfilled=No }} The bioactivity of proteins is based on their capacity to bin...)
- 09:21, 30 September 2014 (diff | hist) . . (+17) . . Hotspots of Change in Brain Metabolism during Parkinson’s Disease (current)
- 09:20, 30 September 2014 (diff | hist) . . (-17) . . Hotspots of Change in Brain Metabolism during Parkinson’s Disease
- 09:19, 30 September 2014 (diff | hist) . . (+1) . . Towards optimizing genome-scale kinetic models by characterizing elementary flux modes (current)
- 09:19, 30 September 2014 (diff | hist) . . (+1) . . Topological features of metabolic networks in optimal states (current)
- 08:24, 26 September 2014 (diff | hist) . . (+195) . . Easy processing of high-throughput microplate data
- 08:19, 26 September 2014 (diff | hist) . . (+192) . . Efficient storage and analysis of high-dimensional metabolic data
- 08:15, 26 September 2014 (diff | hist) . . (+1,140) . . N Database of genome-scale metabolic models (New page: {{Projectproposal |Contact person=Douwe Molenaar |Contact person2=Esther Kuiper |Master areas=Systems Biology |Fulfilled=No }} Genome scale metabolic network reconstruction and the simulat...)
- 08:05, 26 September 2014 (diff | hist) . . (+1) . . Efficient storage and analysis of high-dimensional metabolic data
- 14:15, 3 September 2014 (diff | hist) . . (+75) . . Mathematics (→First Class)
- 14:11, 3 September 2014 (diff | hist) . . (-2,521) . . Mathematics
- 14:10, 3 September 2014 (diff | hist) . . (0) . . N File:Calculus problemset 1 answers.pdf (current)
- 14:08, 3 September 2014 (diff | hist) . . (-330) . . Mathematics (→General Remarks)
- 13:42, 3 September 2014 (diff | hist) . . (+163) . . Mathematics (→Study material)
- 13:14, 3 September 2014 (diff | hist) . . (-57) . . Mathematics (→Study material)
- 13:13, 3 September 2014 (diff | hist) . . (0) . . N File:Syllabus.pdf (current)
- 09:20, 15 March 2014 (diff | hist) . . (-22) . . Efficient storage and analysis of high-dimensional metabolic data
- 09:19, 15 March 2014 (diff | hist) . . (+1,023) . . N Efficient storage and analysis of high-dimensional metabolic data (New page: {{Projectproposal |Contact person=Douwe Molenaar |Contact person2=Petra Krumpochova |Master areas=Bioinformatics, Systems Biology |Fulfilled=No }} Aim of this project is to describe and co...)
- 09:12, 15 March 2014 (diff | hist) . . (+1) . . Easy processing of high-throughput microplate data
- 08:50, 17 February 2014 (diff | hist) . . (+137) . . N Filipe Branco dos Santos (New page: {{Staffmember |Roomnumber=C3.264, Science Park, UvA |Email=f.brancodossantos@uva.nl |Master areas=Systems Biology |Picture=picture.jpg }})
- 08:44, 17 February 2014 (diff | hist) . . (-1) . . Easy processing of high-throughput microplate data
- 08:44, 17 February 2014 (diff | hist) . . (+15) . . Easy processing of high-throughput microplate data
- 08:43, 17 February 2014 (diff | hist) . . (-65) . . Easy processing of high-throughput microplate data
- 08:41, 17 February 2014 (diff | hist) . . (+43) . . Topological features of metabolic networks in optimal states
- 08:41, 17 February 2014 (diff | hist) . . (+22) . . Simulation of optimal stress responses of microorganisms using whole-cell models
- 08:40, 17 February 2014 (diff | hist) . . (-25) . . Discovering design principles in biological networks
- 08:39, 17 February 2014 (diff | hist) . . (+42) . . Counting single mRNA molecules in single yeast cells
- 08:37, 17 February 2014 (diff | hist) . . (-157) . . Towards optimizing genome-scale kinetic models by characterizing elementary flux modes
- 08:36, 17 February 2014 (diff | hist) . . (-118) . . Modeling extrinsic fluctuations with StochPy
- 08:36, 17 February 2014 (diff | hist) . . (+69) . . Timo Maarleveld
- 08:35, 17 February 2014 (diff | hist) . . (+22) . . Meike Wortel
- 08:33, 17 February 2014 (diff | hist) . . (-16) . . Simulation of optimal stress responses of microorganisms using whole-cell models
- 08:33, 17 February 2014 (diff | hist) . . (+1,064) . . N Simulation of optimal stress responses of microorganisms using whole-cell models (New page: {{Projectproposal |Contact person=Frank Bruggeman |Contact person2=Niclas Nordhold |Contact person3=Douwe Molenaar |Master areas=Bioinformatics, Systems Biology |Fulfilled=No }} When organ...)
- 08:32, 17 February 2014 (diff | hist) . . (+130) . . N Timo Maarleveld (New page: {{Staffmember |Roomnumber=M-262 |Email=t.r.maarleveld@vu.nl |Master areas=Bioinformatics, Systems Biology |Picture=picture.jpg }})
- 08:29, 17 February 2014 (diff | hist) . . (+1,104) . . N Topological features of metabolic networks in optimal states (New page: {{Projectproposal |Contact person=Frank Bruggeman |Contact person2=Meike Wortel |Master areas=Bioinformatics, Systems Biology |Fulfilled=No }} Cells respond to environment changes by rewir...)
- 08:28, 17 February 2014 (diff | hist) . . (+61) . . A stochastic simulator for growing single cells: software extensions and realistic simulation
- 08:26, 17 February 2014 (diff | hist) . . (+949) . . N Counting single mRNA molecules in single yeast cells (New page: {{Projectproposal |Contact person=Frank Bruggeman |Contact person2=Anne Schwabe |Contact person3=Johan van Heerden |Master areas=Systems Biology |Fulfilled=No }} With a method called RNA F...)
- 08:22, 17 February 2014 (diff | hist) . . (+1,234) . . N A stochastic simulator for growing single cells: software extensions and realistic simulation (New page: {{Projectproposal |Contact person=Frank Bruggeman |Contact person2=Timo Maarleveld |Contact person3=Anne Schwabe |Master areas=Bioinformatics, Systems Biology |Fulfilled=No }} When a popul...)
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