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=Introduction and Checkpoints=
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#REDIRECT [[Canvas]]
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{{Header Bioinformatics and Systems Biology}}
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==Announcements==
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* Information on [https://www.few.vu.nl/en/current-students/vu-uva-cooperation/index.asp VU-UvA cross-registration (necessary for all students in the master)].
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When you want to start a Master Project you have to take the following steps:
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* Please check the overview of formalities under the section '[[#Bioinformatics_.26_Systems_Biology_Master|Bioinformatics & Systems Biology Master]]' below
  
#First you need to orientate on the different subjects that can be done at the VU or at a company. You can find all the information here on this Wiki and at the [http://www.few.vu.nl/stagebureau "stagebureau"].
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* [[media:voorlichting-20140829.pdf|The introduction presentation of the Master program - 29th August 2014]]
#Make an appointment with the Master Coordinator to discuss your interests. The Master Coordinator will suggest a supervisor. When your interest lies with a domain of another Master Programme the Master Coordinator will send you to the contact person of this domain. The contact person will then suggest a supervisor.
 
#Make an appointment with the suggested supervisor. During this meeting you will make an agreement about the master project. The agreement must consist of the following items: Project place, theme of the research question, supervisor, second reader and period. After this you have to register your project in the Master Project Wiki.
 
#When the project is registered you have to print your Master Project page and let your supervisor sign. Then you have to submit the signed printout to the Onderwijsbureau FEW.
 
#After the first month you submit your plan. The plan consists of the context, the problem statement, the research question, the method and a planning formulated on max. 4 pages. At the same moment you will present this material to your supervisor and other students and their supervisors in a meeting.
 
#When the final version of master project is submitted to your supervisor and the second reader you will give the final presentation during a special meeting. After this your supervisor will give the final grade for your work. Here you can find the assessment form for the [http://www.few.vu.nl/nl/Images/master_project_beoordeling_v4_afd%2EInformatica_tcm38-107081.pdf  Master Project].
 
  
=== Some remarks ===
 
  
#In principle you cannot do your Master Project at the company you already work for.
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==Bioinformatics & Systems Biology Master==
#The Master Project has to be written in English.
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* [http://www.vu.nl/bioinformatics General information about the Master Bioinformatics and Systems Biology - vu.nl/bioinformatics]
#The checkpoints above are derived from the [[The checkpoints|general guidelines]] for the Masterproject within the department of Computer Science.
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* [http://www.uva.nl/onderwijs/master/masteropleidingen/item/systems-biology.html General information about the Master Life Sciences: Systems Biology and Bioinformatics - UvA]
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* [[Formal procedures during your master]]
  
= Master Project Guide =
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* We have a [[media:Nice_paper_describing_the_setup_and_structure_of_our_Master_programme_Bioinf_and_Sys_Bio.pdf‎|Nice paper describing the setup and structure of our Master programme]]
  
*[[The assessment]]
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* [[Media:Bioinformatics and Systems Biology Course Scheme.pdf|Scheme of Compulsory and Optional Courses]]
*[[The basic principles]]
 
*[[The phases]]
 
  
*[http://www.few.vu.nl/nl/Images/master_project_beoordeling_v4_afd%2EInformatica_tcm38-107081.pdf  Master Project Assessment Form]
 
  
= Overview of Masterprojects =
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==Courses in the Bioinformatics & Systems Biology Master==
Click on one of the pages below to get an overview of current and past projects, and to register your own project.
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===Compulsory===
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* [[Fundamentals of Bioinformatics]]
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* [[Introduction to Systems Biology]]
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** [[Bioinformatics Programming Classes|Programming Classes]]
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** [[Fundamentals of Bioinformatics#Biology Class|Biology Classes]]
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** [[Mathematics|Maths Classes]]
  
*[[Bioinformatics]]
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<!--===Bioinformatics Profile===
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* [[Algorithms in Sequence Analysis]]
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-->
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<!--
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===Optional Courses Outside Profile===
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Here, we like to collect views of our students participating in these courses over the previous (few) years, to facilitate choosing:
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* [[BioinfSysBio view on Machine Learning]]
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* [[BioinfSysBio view on Data Mining]]
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* [[BioinfSysBio view on Signal Transduction in Health and Disease]]
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* [[BioinfSysBio view on Advanced Selforganisation]]
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-->
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===Practical Information for Courses===
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* [http://rooster.vu.nl official VU schedules are at rooster.vu.nl]
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** you should also be able to see the schedule on VUnet once you are enrolled in a course
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** <small>([http://vurooster.nl/ vurooster.nl] offered a user-friendly interface but seems not to have been updated lately.)</small>
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* [http://rooster.uva.nl official UvA schedules are at rooster.uva.nl]
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* [[Bioinformatics and Systems Biology Rules for Assignments and Exams|Rules for Assignments and Exams]]
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* [[Media:Bioinformatics and Systems Biology Course Scheme.pdf|Scheme of Compulsory and Optional Courses]]
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* [http://www.vu.nl/nl/studiegids/2014-2015/master/a-b/bioinformatics/index.asp Course descriptions]
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* Planning your [[Bioinformatics and Systems Biology Oral Exam | oral exam]]
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* Courses of [[Bioinformatics and Systems Biology courses 2013-2014 | previous year (2013-2014)]]
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* Courses of [[Bioinformatics and Systems Biology courses 2012-2013 | year (2012-2013)]]
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===Internships===
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*[[Bioinformatics and Systems Biology Internships| Information on planning your internship]]
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<!-- *'''[[Bioinformatics| A list of current and open Bioinformatics Master projects]]''' -->
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**Near the end of your first year, you will all be signed up to the [https://listserver.vu.nl/mailman/listinfo/biosb-interns.few BioSB internships mailing list]
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**'''[http://teusinkbruggemanlab.nl/teaching/internships/ A list of current and open Systems Biology Master Projects]'''
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**'''[http://www.bdagroup.nl/content/Education/master.php A list of current and open Biosystems Data Analysis Master Projects]'''
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**'''A number of Systems Biology-related projects can be found at the [http://www.falw.vu/~microb/mcf/education/Internships.htm Section Molecular Cell Physiology]'''
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*[[Bioinformatics and Systems Biology Internships External| Internships at the IBIVU for external students]]
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===Research Proposal===
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*[[Bioinformatics and Systems Biology Research Proposal|Information on writing your research proposal]]
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*[[Bioinformatics and Systems Biology student talks| Schedule of student talks - MSc Bioinformatics and Systems Biology]]
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==Information for Prospective Students ==
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* [[Bioinformatics Master Entry Requirements | Master Entry Requirements]]
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* Information for [[Bioinformatics and Systems Biology Prospective Students | Prospective Students]]
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==Information for PhD Students and other group members ==
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* [http://wiki.cs.vu.nl/ibivu/index.php/Checklist_for_new_group_members Checklist for new group members]
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== Bioinformatics Minor (Bachelor) ==
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* [[Bioinformatics and Systems Biology Minor Program]]
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* [[Bioinformatics and Systems Biology - Inschrijfprocedure | Inschrijfprocedure (Registration procedure - in Dutch)]]
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==Miscellaneous==
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* [[Directions | How to find the campus and the right building]]
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* [http://www.few.vu.nl/en/onderwijs/studentregelingen/ Getting your MSc degree (procedure, due dates)] at the Faculty of Sciences
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* [[Bioinformatics and Systems Biology Job Search | How to find a job or PhD position in Bioinformatics and/or Systems Biology?]]
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* Become active in the Dutch [http://www.iscbsc.org/rsg/rsg-netherlands Regional Student Group] from the [http://www.iscbsc.org ISCB-SC]
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* [http://compbiol.plosjournals.org/perlserv/?request=get-document&amp;doi=10.1371/journal.pcbi.0030229&amp;ct=1 Ten Simple Rules for Graduate Students]
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*'''Student queries may be directed at [mailto:s.abeln@vu.nl?subject=Student%20Query Sanne Abeln (VU)], [mailto:d.molenaar@vu.nl?subject=Student%20Query Douwe Molenaar (VU)], [mailto:k.a.feenstra@vu.nl?subject=Student%20Query Anton Feenstra (VU)] or [mailto:h.c.j.hoefsloot@uva.nl?subject=Student%20Query Huub Hoefsloot (UvA)].'''
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{{Footer Bioinformatics and Systems Biology}}

Latest revision as of 18:18, 19 September 2018

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Announcements


Bioinformatics & Systems Biology Master


Courses in the Bioinformatics & Systems Biology Master

Compulsory


Practical Information for Courses



Internships


Research Proposal


Information for Prospective Students


Information for PhD Students and other group members


Bioinformatics Minor (Bachelor)


Miscellaneous



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