Difference between revisions of "Programme Bioinformatics meets Systems Biology 2012"

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<html><head><title>Presentations</title><meta http-equiv="content-type" content="text/html; charset=UTF-8" /><meta http-equiv="X-UA-Compatible" content="IE=8;IE=9;chrome=1;" /><meta name='lsq' content='1'/><meta name='trixrows' content='99'/><meta name='trixr1' content='0'/><meta name='trixr2' content='18'/><meta name='trixdiv' content='20'/><meta name='trixcnt' content='1'/><meta name='trixlast' content='18'/><link rel=stylesheet href="/static/spreadsheets/client/css/3971517159-tiler_view_ltr.css" type="text/css"><style>html {overflow:visible};</style></head><body style='border:0px;margin:0px'><style>.tblGenFixed td {padding:0 3px;overflow:hidden;white-space:normal;letter-spacing:0;word-spacing:0;background-color:#fff;z-index:1;border-top:0px none;border-left:0px none;border-bottom:1px solid #CCC;border-right:1px solid #CCC;} .dn {display:none} .tblGenFixed td.s0 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{background-color:white;font-family:arial,sans,sans-serif;font-size:100.0%;font-weight:normal;font-style:normal;color:#000000;text-decoration:none;text-align:left;vertical-align:bottom;direction:auto-ltr;white-space:normal;overflow:hidden;border-top:1px solid #CCC;border-right:;border-bottom:;} .tblGenFixed td.s4 {background-color:white;font-family:arial,sans,sans-serif;font-size:100.0%;font-weight:normal;font-style:normal;color:#000000;text-decoration:none;text-align:left;vertical-align:bottom;direction:Context;white-space:normal;overflow:hidden;border-right:;border-bottom:;border-left:1px solid #CCC;} </style><table dir='ltr' border=0 cellpadding=0 cellspacing=0 class='tblGenFixed' id='tblMain'><tr class='rShim'><td class='rShim' style='width:0;'><td class='rShim' style='width:52px;'><td class='rShim' style='width:66px;'><td class='rShim' style='width:64px;'><td class='rShim' style='width:120px;'><td class='rShim' style='width:377px;'><td class='rShim' style='width:487px;'><td class='rShim' style='width:120px;'><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  dir='ltr' class='s0'>slot<td  dir='ltr' class='s1'>start<td  dir='ltr' class='s1'>end<td  dir='ltr' class='s2'>group<td dir='ltr' class='s2'>title<td  dir='ltr' class='s2'>participants<td  dir='ltr' class='s3'>Students in two successive slots</tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>1<td  class='s5'>9:00 AM<td  class='s5'>9:30 AM<td  dir='ltr' class='s6'>SB_group1<td  dir='ltr' class='s6'>Function of cell-to-cell variability<td  dir='ltr' class='s6'>Arlo Hoogeveen, Wouter Woudt, Marit Hoffmayer, David Hagos<td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>2<td class='s5'>9:30 AM<td  class='s5'>10:00 AM<td  dir='ltr' class='s6'>SB_group2<td  dir='ltr' class='s6'>Laboratory evolution<td  dir='ltr' class='s6'>Stefan Payralbe, Jacomien Feilzer, Fedde Schaeffer<td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>3<td  class='s5'>10:00 AM<td  class='s5'>10:30 AM<td  dir='ltr' class='s6'>SB_group3<td  dir='ltr' class='s6'>Cancer systems biology<td  dir='ltr' class='s6'>Vincent de Ruijter, Chris Hettinga, Alumit Mannheim, Mandlakayise Lucky Nhleko<td  dir='ltr' class='s6'>Alumit</tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>4<td  class='s5'>10:30 AM<td  class='s5'>11:00 AM<td  dir='ltr' class='s6'>BI_group1<td  dir='ltr' class='s6'>PFAM<td  dir='ltr' class='s6'>Alumit Mannheim, Victor Rijks, Ruigi Han, Arlo Hoogeveen, Supawat Prabpracha, Paul Nijssen, Danne Elbers, Evert Schone, Joleen Traats, Wouter Woud, Wouter Stegeman<td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>5<td  class='s5'>11:00 AM<td  class='s5'>11:30 AM<td  dir='ltr' class='s6'>break_short<td  dir='ltr' class='s6'>Short break<td ><td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td class='s4'>6<td  class='s5'>11:30 AM<td  class='s5'>12:00 PM<td  dir='ltr' class='s6'>SB_group4<td  dir='ltr' class='s6'>Cell-to-cell variability<td  dir='ltr' class='s6'>Mandy de Kwaasteniet, Wouter Stegeman, Claire Baudier, Maxim Moinat<td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>6<td  class='s5'>12:00 PM<td  class='s5'>12:30 PM<td  dir='ltr' class='s6'>SB_group5<td  dir='ltr' class='s6'>Constraint-based modeling<td  dir='ltr' class='s6'>Aphiwe Mqunyana, Svetlana Stoma, Jochem Bijlaard, Victor Rijks<td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>7<td  class='s5'>12:30 PM<td  class='s5'>1:00 PM<td  dir='ltr' class='s6'>BI_group2<td  dir='ltr' class='s6'>GO<td  dir='ltr' class='s6'>Stephan Pauw, Svetlana Stoma, Patrick van der Berg, Yasser Alnakhli, David Hagos, Aristeidis Kondylidis, Alexandros Valetopoulos, Marit Hoff-Hoffmayer-Zlotnik, Claire Baudier, Maria Djordjanova<td  dir='ltr' class='s6'>svetlana</tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>8<td  class='s5'>1:00 PM<td  class='s5'>2:00 PM<td  dir='ltr' class='s6'>break_long<td  dir='ltr' class='s6'>Long break<td ><td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td class='s4'>10<td  class='s5'>2:00 PM<td  class='s5'>2:30 PM<td  dir='ltr' class='s6'>SB_group6<td  dir='ltr' class='s6'>Top-down systems biology<td  dir='ltr' class='s6'>Evert Schone, Maurits Dijkstra, Sun Chonglu, Patrick van den Berg<td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>11<td  class='s5'>2:30 PM<td  class='s5'>3:00 PM<td  dir='ltr' class='s6'>SB_group7<td  dir='ltr' class='s6'>Systems biology as a tool to enhance solar biofuel production<td  dir='ltr' class='s6'>Stephan Pauw, Aristeides Kondylidis, Yasser Alnakhli, Marc Pauper<td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>12<td  class='s5'>3:00 PM<td  class='s5'>3:30 PM<td  dir='ltr' class='s6'>BI_group3<td  dir='ltr' class='s6'>SCOP<td  dir='ltr' class='s6'>Eva Deutekom, Maxim Moinat, Tom Constandse, Erwin Klein, Michiel Thiecke, Robbert Geerts, Mandy de Kwaasteniet, Vincent de Ruijter, Jacomien Feilzer, Jochem Bijlard<td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>13<td  class='s5'>3:30 PM<td  class='s5'>4:00 PM<td  dir='ltr' class='s6'>break_short<td  dir='ltr' class='s6'>Short break<td ><td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td class='s4'>14<td  class='s5'>4:00 PM<td  class='s5'>4:30 PM<td  dir='ltr' class='s6'>SB_group8<td  dir='ltr' class='s6'>Regulatory network patterns<td  dir='ltr' class='s6'>Joleen Traets, Tom Constandse, Eva Deutekom, Johan Hendriks<td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>15<td  class='s5'>4:30 PM<td  class='s5'>5:00 PM<td  dir='ltr' class='s6'>SB_group9<td  dir='ltr' class='s6'>Shifts in metabolic strategies<td  dir='ltr' class='s6'>Alexandros Valetopoulos, Danne Elbers, Michiel Thiecke, Hanieh Shekarian<td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>16<td  class='s5'>5:00 PM<td  class='s5'>5:30 PM<td  dir='ltr' class='s6'>BI_group4<td  dir='ltr' class='s6'>Overall comparison<td  dir='ltr' class='s6'>Maurits Dijkstra, Stefan Payralbe, Chris Hettinga, Fedde Schaefer, Marine Milo, Sun Chonglu, Mandlakayise Nhleko, Aphiwe Mqunyana, Manfred Malleier<td ></tr><tr dir='ltr'><td class=hd><p style='height:16px;'>.</td><td  class='s4'>17<td  class='s5'>5:30 PM<td  class='s7'><td ><td ><td ><td ></tr></table></body></html>
+
|-
 +
! Time !! Topic !! Title !! Participants
 +
|-
 +
| 9:00 || SysBio || Function of cell-to-cell variability || Arlo Hoogeveen, Wouter Woudt, Marit Hoffmayer, David Hagos
 +
|-
 +
| 9:30 || SysBio || Laboratory evolution || Stefan Payralbe, Jacomien Feilzer, Fedde Schaeffer
 +
|-
 +
| 10:00 || SysBio || Cancer systems biology || Vincent de Ruijter, Chris Hettinga, Alumit Mannheim, Mandlakayise Lucky Nhleko
 +
|-
 +
| 10:30 || Bioinf || PFAM || Alumit Mannheim, Victor Rijks, Ruigi Han, Arlo Hoogeveen, Supawat Prabpracha, Paul Nijssen, Danne Elbers, Evert Schone, Joleen Traats, Wouter Woud, Wouter Stegeman
 +
|-
 +
| 11:00 || Coffe break || ||
 +
|-
 +
| 11:30 || SysBio || Cell-to-cell variability || Mandy de Kwaasteniet, Wouter Stegeman, Claire Baudier, Maxim Moinat
 +
|-
 +
| 12:00 || SysBio || Constraint-based modeling || Aphiwe Mqunyana, Svetlana Stoma, Jochem Bijlaard, Victor Rijks
 +
|-
 +
| 12:30 || Bioinf || GO || Stephan Pauw, Svetlana Stoma, Patrick van der Berg, Yasser Alnakhli, David Hagos, Aristeidis Kondylidis, Alexandros Valetopoulos, Marit Hoff-Hoffmayer-Zlotnik, Claire Baudier, Maria Djordjanova
 +
|-
 +
| 13:00 || Lunch break || ||
 +
|-
 +
| 14:00 || SysBio || Top-down systems biology || Evert Schone, Maurits Dijkstra, Sun Chonglu, Patrick van den Berg
 +
|-
 +
| 14:30 || SysBio || Systems biology as a tool to enhance solar biofuel production || Stephan Pauw, Aristeides Kondylidis, Yasser Alnakhli, Marc Pauper
 +
|-
 +
| 15:00 || Bioinf || SCOP || Eva Deutekom, Maxim Moinat, Tom Constandse, Erwin Klein, Michiel Thiecke, Robbert Geerts, Mandy de Kwaasteniet, Vincent de Ruijter, Jacomien Feilzer, Jochem Bijlard
 +
|-
 +
| 15:30 || Tea break || ||
 +
|-
 +
| 16:00 || SysBio || Regulatory network patterns || Joleen Traets, Tom Constandse, Eva Deutekom, Johan Hendriks
 +
|-
 +
| 16:30 || SysBio || Shifts in metabolic strategies || Alexandros Valetopoulos, Danne Elbers, Michiel Thiecke, Hanieh Shekarian
 +
|-
 +
| 17:00 || Bioinf || Overall comparison || Maurits Dijkstra, Stefan Payralbe, Chris Hettinga, Fedde Schaefer, Marine Milo, Sun Chonglu, Mandlakayise Nhleko, Aphiwe Mqunyana, Manfred Malleier
 +
|-
 +
| 17:30 || Drinks || Everybody ||
 +
|
 +
}

Revision as of 15:25, 11 October 2012

Time Topic Title Participants
9:00 SysBio Function of cell-to-cell variability Arlo Hoogeveen, Wouter Woudt, Marit Hoffmayer, David Hagos
9:30 SysBio Laboratory evolution Stefan Payralbe, Jacomien Feilzer, Fedde Schaeffer
10:00 SysBio Cancer systems biology Vincent de Ruijter, Chris Hettinga, Alumit Mannheim, Mandlakayise Lucky Nhleko
10:30 Bioinf PFAM Alumit Mannheim, Victor Rijks, Ruigi Han, Arlo Hoogeveen, Supawat Prabpracha, Paul Nijssen, Danne Elbers, Evert Schone, Joleen Traats, Wouter Woud, Wouter Stegeman
11:00 Coffe break
11:30 SysBio Cell-to-cell variability Mandy de Kwaasteniet, Wouter Stegeman, Claire Baudier, Maxim Moinat
12:00 SysBio Constraint-based modeling Aphiwe Mqunyana, Svetlana Stoma, Jochem Bijlaard, Victor Rijks
12:30 Bioinf GO Stephan Pauw, Svetlana Stoma, Patrick van der Berg, Yasser Alnakhli, David Hagos, Aristeidis Kondylidis, Alexandros Valetopoulos, Marit Hoff-Hoffmayer-Zlotnik, Claire Baudier, Maria Djordjanova
13:00 Lunch break
14:00 SysBio Top-down systems biology Evert Schone, Maurits Dijkstra, Sun Chonglu, Patrick van den Berg
14:30 SysBio Systems biology as a tool to enhance solar biofuel production Stephan Pauw, Aristeides Kondylidis, Yasser Alnakhli, Marc Pauper
15:00 Bioinf SCOP Eva Deutekom, Maxim Moinat, Tom Constandse, Erwin Klein, Michiel Thiecke, Robbert Geerts, Mandy de Kwaasteniet, Vincent de Ruijter, Jacomien Feilzer, Jochem Bijlard
15:30 Tea break
16:00 SysBio Regulatory network patterns Joleen Traets, Tom Constandse, Eva Deutekom, Johan Hendriks
16:30 SysBio Shifts in metabolic strategies Alexandros Valetopoulos, Danne Elbers, Michiel Thiecke, Hanieh Shekarian
17:00 Bioinf Overall comparison Maurits Dijkstra, Stefan Payralbe, Chris Hettinga, Fedde Schaefer, Marine Milo, Sun Chonglu, Mandlakayise Nhleko, Aphiwe Mqunyana, Manfred Malleier
17:30 Drinks Everybody

}