Programme Bioinformatics meets Systems Biology 2012

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Below you find the schedule for the mini symposium 'Bioinformatics meets Systems Biology' where all students from the Fundamentals of Bioinformatics and the Introduction to Systems Biology courses will present their work.

  • The symposium will take place in Artis Zoo, in the lecture room “De Volharding” (Artis - Building 42 highlighted in a yellow circle), which is at 10-15 min. walking distance from the main entrance. You should have a ticket, if not please ask Douwe
  • For the Bioinformatics 'discussion groups', one or two students from each group present the work. All group members should participate in answering questions.
  • We expect each student to ask at least one question during the whole day - we will (try to) keep track of that! As part of the discussion group, it would be a good idea to prepare several questions in advance - you should have a pretty good idea of the contents :-) Your question might be for one of the Bioinformatics or the Sytems Biology presentations, that does not matter (but it cannot be your own group, obviously).


Time Topic Title Participants
09:00 SysBio Function of cell-to-cell variability Arlo Hoogeveen, Wouter Woudt, Marit Hoffmayer, David Hagos
09:30 SysBio Cell-to-cell variability Mandy de Kwaasteniet, Wouter Stegeman, Claire Baudier, Maxim Moinat
10:00 Bioinf General introduction Maurits Dijkstra, Stefan Payralbe, Chris Hettinga, Fedde Schaefer, Marine Milo, Sun Chonglu, Mandlakayise Nhleko, Aphiwe Mqunyana, Manfred Malleier
10:10 Bioinf SCOP Eva Deutekom, Maxim Moinat, Tom Constandse, Erwin Klein, Michiel Thiecke, Robbert Geerts, Mandy de Kwaasteniet, Vincent de Ruijter, Jacomien Feilzer, Jochem Bijlard
10:40 Coffee
11:10 SysBio Laboratory evolution Stefan Payralbe, Jacomien Feilzer, Fedde Schaeffer
11:40 SysBio Cancer systems biology Vincent de Ruijter, Chris Hettinga, Alumit Mannheim, Mandlakayise Lucky Nhleko
12:10 SysBio Constraint-based modeling Aphiwe Mqunyana, Svetlana Stoma, Jochem Bijlaard, Victor Rijks
12:40 Bioinf GO Stephan Pauw, Svetlana Stoma, Patrick van der Berg, Yasser Alnakhli, David Hagos, Aristeidis Kondylidis, Alexandros Valetopoulos, Marit Hoff-Hoffmayer-Zlotnik, Claire Baudier, Maria Djordjanova
13:10 Lunch
14:10 SysBio Top-down systems biology Evert Schone, Maurits Dijkstra, Sun Chonglu, Patrick van den Berg
14:40 SysBio Systems biology as a tool to enhance solar biofuel production Stephan Pauw, Aristeides Kondylidis, Yasser Alnakhli, Marc Pauper
15:10 Bioinf PFAM Alumit Mannheim, Victor Rijks, Ruigi Han, Arlo Hoogeveen, Supawat Prabpracha, Paul Nijssen, Danne Elbers, Evert Schone, Joleen Traats, Wouter Woud, Wouter Stegeman
15:40 Tea
16:10 SysBio Regulatory network patterns Joleen Traets, Tom Constandse, Eva Deutekom, Johan Hendriks
16:40 SysBio Shifts in metabolic strategies Alexandros Valetopoulos, Danne Elbers, Michiel Thiecke, Hanieh Shekarian
17:10 Bioinf Overall comparison Maurits Dijkstra, Stefan Payralbe, Chris Hettinga, Fedde Schaefer, Marine Milo, Sun Chonglu, Mandlakayise Nhleko, Aphiwe Mqunyana, Manfred Malleier
17:40 Drinks
17:40 Drinks Everybody

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